Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0444 | pirA | PA0444 | PA0931 | N-carbamoyl-beta-alanine amidohydrolase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.699 |
| PA2289 | pfeA | PA2289 | PA2688 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.685 |
| PA2289 | pirA | PA2289 | PA0931 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.682 |
| PA2289 | tonB1 | PA2289 | PA5531 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | TonB1; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). | 0.747 |
| PA2689 | fpvB | PA2689 | PA4168 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Second ferric pyoverdine receptor FpvB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.440 |
| PA2689 | pfeA | PA2689 | PA2688 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.985 |
| PA2689 | pirA | PA2689 | PA0931 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.743 |
| PA2983 | pfeA | PA2983 | PA2688 | Probable tolQ-type transport protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.660 |
| PA2983 | phuR | PA2983 | PA4710 | Probable tolQ-type transport protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme/hemoglobin uptake outer membrane receptor PhuR precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.478 |
| PA2983 | pirA | PA2983 | PA0931 | Probable tolQ-type transport protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.723 |
| PA2983 | tonB1 | PA2983 | PA5531 | Probable tolQ-type transport protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | TonB1; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). | 0.702 |
| fepB | fepD | PA4159 | PA4160 | Ferrienterobactin-binding periplasmic protein precursor FepB; Product name confidence: Class 2 (High similarity to functionally studied protein). | Ferric enterobactin transport protein FepD; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.978 |
| fepB | pfeA | PA4159 | PA2688 | Ferrienterobactin-binding periplasmic protein precursor FepB; Product name confidence: Class 2 (High similarity to functionally studied protein). | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.769 |
| fepB | pirA | PA4159 | PA0931 | Ferrienterobactin-binding periplasmic protein precursor FepB; Product name confidence: Class 2 (High similarity to functionally studied protein). | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.718 |
| fepB | tonB1 | PA4159 | PA5531 | Ferrienterobactin-binding periplasmic protein precursor FepB; Product name confidence: Class 2 (High similarity to functionally studied protein). | TonB1; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). | 0.798 |
| fepD | fepB | PA4160 | PA4159 | Ferric enterobactin transport protein FepD; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | Ferrienterobactin-binding periplasmic protein precursor FepB; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.978 |
| fepD | pfeA | PA4160 | PA2688 | Ferric enterobactin transport protein FepD; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.510 |
| fepD | pirA | PA4160 | PA0931 | Ferric enterobactin transport protein FepD; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | Ferric enterobactin receptor PirA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.696 |
| fepD | tonB1 | PA4160 | PA5531 | Ferric enterobactin transport protein FepD; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | TonB1; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). | 0.488 |
| fpvB | PA2689 | PA4168 | PA2689 | Second ferric pyoverdine receptor FpvB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.440 |
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